Installation

System requirements

• Linux/Unix

• Python >= 3.8

We recommend to create an independent conda environment for MultiSpace. If users do not have conda, please install Miniconda first:

wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh

Install MultiSpace using conda(stable version)

Step 1 Prepare conda environment for MultiSpace.

# Create a python3.8 environment for installing MultiSpace.
conda create -n multispace python=3.8
# Install through the following commands:
conda config --add channels defaults
conda config --add channels dongqingsun
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --add channels changzhanhe

Step 2 Install MultiSpace.

conda install -c changzhanhe multispace

Install MultiSpace from Github(developing version)

Install MultiSpace

git clone https://github.com/Changzhanhe/MultiSpace.git
cd MultiSpace
# Create a conda environment for MultiSpace.
conda env create -f environment.yml -n multispace
# Installing package
conda activate multispace
python setup.py install